Pharmacovigilance · Compliance

5 Pharmacovigilance Compliance Mistakes Nigerian Pharma Companies Make

Most compliance failures are not caused by ignoring the rules. They come from doing the visible part of pharmacovigilance well and missing the system behind it.

By MedNova Lifesciences Last updated: September 2026 ~18 min read Diagnostic Guide

Most pharmacovigilance compliance failures in Nigeria are not caused by companies ignoring the rules. They are caused by companies doing the visible part of pharmacovigilance well and missing the part that is actually inspected. Adverse event reports get submitted. The system around them does not exist, or exists only on paper. The five mistakes below account for most of the gaps we see, and each one maps to a specific requirement in the NAFDAC Good Pharmacovigilance Practice Guidelines. For each mistake we set out what it looks like, what NAFDAC actually requires, how to fix it, and the evidence that proves the fix is in place.

The five mistakes at a glance

MistakeWhat it looks likeWhat fixes it
1. Treating pharmacovigilance as an adverse event inboxReports are submitted, but no quality system, procedures or monitoring sit behind them.Build and document the system NAFDAC defines, then measure it.
2. A QPPV in name onlyA named person without authority, a deputy, database access or residency in Nigeria.Give the role its authority, cover, access and documentation.
3. Letting cases leak at the edgesSafety information reaches sales, quality, medical information or distributors and never reaches pharmacovigilance.Train every receiving function, reconcile systems and contract every partner.
4. Processing cases but never reviewing them togetherEvery case handled correctly, none ever looked at in aggregate.Run documented signal detection and cumulative review on a fixed cycle.
5. Running a system you cannot proveActivity happens but is not recorded, measured, audited or reflected in the master file.Instrument the system, keep the master file live and close the audit loop.

Why these mistakes are so common in Nigeria

The pattern is not new. A 2018 situational analysis of pharmacovigilance in Nigeria, prepared by KNCV Tuberculosis Foundation with NAFDAC and Nigerian academic partners at the start of the PAVIA project, recorded that NAFDAC was concerned about the pharmacovigilance competence of some QPPVs appointed by marketing authorisation holders, that periodic safety update reports submitted to NAFDAC often lacked data specific to Nigeria, and that local companies were finding implementation of the GVP guidelines harder than multinationals.

The regulatory environment has moved substantially since then. What has moved more slowly, in many companies, is the internal system. That gap is where these five mistakes live.

Mistake 1 of 5

Treating pharmacovigilance as an adverse event inbox

What it looks like

A shared email address receives side-effect reports. A member of staff, often in regulatory affairs or medical information, fills in a form and submits it. The case is filed. Nobody can describe the procedure that governs this, because there is not one. When asked about the company's pharmacovigilance system, management points to the submission record.

What NAFDAC actually requires

NAFDAC's guidelines define a pharmacovigilance system as a quality system used by the Certificate of Registration Holder to fulfil its regulatory responsibilities, designed to monitor the safety of authorised products and to detect any change to their benefit to risk balance. The guidelines then name the processes treated as critical. Case handling is only one of them. The list also includes continuous safety profile monitoring and benefit to risk evaluation, risk management and evaluation of risk minimisation, signal detection and management, periodic safety update reporting, responding to Agency requests, interaction between pharmacovigilance and the product quality defect system, safety communication, keeping product information current, and implementing safety variations. Every element of the quality system must be documented in written policies and procedures.

The fix

  • Write down the system as it is today, honestly, including what is missing
  • Map each of NAFDAC's critical processes to a named owner and a written procedure
  • Issue standard operating procedures for intake, validation, follow up, submission, signal management, safety communication, deviation handling and archiving
  • Define performance indicators and start measuring them
  • Put business continuity arrangements in place for the critical processes

Evidence to retain

A controlled SOP library with version history, a process map with owners, performance indicator results and a business continuity plan. Our breakdown of what GVP compliance means in Nigeria sets out the full system in detail.

Mistake 2 of 5

A QPPV in name only

What it looks like

A QPPV has been named to NAFDAC, but the person sits in a regional office outside Nigeria, or holds the role alongside a full-time commercial job with no protected time. There is no documented deputy. The QPPV cannot access the safety database outside office hours. Nobody told the QPPV about the product the company acquired last quarter, and the QPPV was not consulted on the vendor contract that now handles case processing.

What NAFDAC actually requires

The Certificate of Registration Holder must have an appropriately qualified QPPV permanently and continuously at its disposal, and the guidelines state that the QPPV should reside and operate in Nigeria. Beyond residency, the requirements are about substance, not titles:

  • The QPPV's duties must be defined in a job description, and the reporting line shown on an organisational chart
  • The company must give the QPPV sufficient authority to influence the performance of the quality system and the pharmacovigilance activities
  • The QPPV must have access to, and authority over, the Pharmacovigilance System Master File
  • Back-up procedures must exist for the QPPV's absence, and the deputy must hold all the information needed to act
  • The company must have a procedure enabling the QPPV to obtain information from the safety database at any time, including outside normal working hours, to answer urgent Agency requests
  • The QPPV acts as the single pharmacovigilance contact point for the Agency on a 24-hour basis and as the contact point for inspections
  • The company must provide the QPPV with training on its pharmacovigilance system before the QPPV takes up the position
  • The QPPV should be notified as early as possible in due diligence when the company plans to acquire products, and involved early when partnerships affect the pharmacovigilance system
  • Tasks delegated by the QPPV must be documented

The 2018 situational analysis cited above recorded NAFDAC's concern about the competence of some QPPVs. Competence is not only a matter of qualifications. A capable QPPV without authority, access or cover cannot discharge the role.

The fix

  • Confirm the QPPV resides and operates in Nigeria, and notify NAFDAC of the name and contact details
  • Issue a job description and place the QPPV on the organisational chart with a clear reporting line
  • Appoint and train a deputy, and document the handover procedure
  • Establish and test out-of-hours access to the safety database
  • Write the QPPV into due diligence, partnership and vendor contracting procedures
  • Document every delegated task

Evidence to retain

The appointment letter and NAFDAC notification, the curriculum vitae, the job description, the organisational chart, the deputy appointment, training records for the QPPV and deputy, the out-of-hours access procedure with a test record, and the delegation log. MedNova provides local QPPV representation in Nigeria, and our QPPV Support Essentials guidance covers governance and oversight.

Mistake 3 of 5

Letting cases leak at the edges

What it looks like

A medical representative hears from a pharmacist that a patient was hospitalised after starting a product, and mentions it in a monthly sales report. A product complaint arrives at the quality department describing a rash, and is investigated as a packaging issue. A distributor keeps its own log of customer complaints and never shares it. The pharmacovigilance team processes every case it receives, correctly. It never receives these.

Why this is the most dangerous mistakeIt is the least visible, and the most likely to produce a serious inspection finding, because the missing cases are, by definition, invisible to the company until someone else finds them.

What NAFDAC actually requires

  • Adequate training for staff whose activities may affect the pharmacovigilance system even though they hold no pharmacovigilance role, naming clinical trials, technical product complaints, medical information, sales and marketing, regulatory affairs, legal affairs and audit
  • Interaction between the pharmacovigilance and product quality defect systems treated as a critical process
  • The master file must describe all parties responsible for solicited and spontaneous case collection, including medical information sites, affiliates, licensing partners and local distribution or marketing arrangements
  • Subcontracted pharmacovigilance tasks governed by detailed, current written agreements describing delegation and each party's responsibilities, with the delegated activities described in the master file and the subcontracts listed in its annex

The company retains full responsibility for the quality and integrity of the system, and regular risk-based audits of the other organisation are recommended. The vendor may itself be inspected at the Agency's discretion.

The fix

  • Map every route by which safety information can enter the company, including sales, quality, medical information, customer service, social media channels the company controls, distributors, licensing partners and patient programmes
  • Train every function on that map to recognise and forward safety information, with a defined forwarding timeline, and record the training
  • Reconcile the safety database against quality complaint and medical information records on a fixed cycle
  • Execute a pharmacovigilance agreement with every distributor, partner and vendor that could receive safety information
  • Audit key partners on a risk basis and track findings to closure
  • Record the receipt date as the day any company employee or contracted party first received the information, not the day the safety team saw it

Evidence to retain

The intake channel map, training records for non-pharmacovigilance staff, reconciliation records with discrepancies and resolutions, signed pharmacovigilance agreements, the subcontract list in the master file annex, and partner audit reports. Our medical information and adverse drug reaction glossary entries set out the definitions staff need to recognise a case.

Mistake 4 of 5

Processing cases but never reviewing them together

What it looks like

Every case is validated, coded, followed up and submitted on time. The case processing metrics look excellent. But nobody has ever sat down with all the cases for a product and asked whether they show a pattern. There is no signal detection procedure. When asked what signals the company identified in the last two years, the answer is none, and there is no record of anyone having looked.

What NAFDAC actually requires

Signal detection and management is named as a critical pharmacovigilance process in NAFDAC's guidelines, alongside continuous safety profile monitoring and benefit to risk evaluation. The master file must describe the process for continuous monitoring of the product's benefit to risk profile, including signal generation, detection and evaluation, and the decision-making that follows. The company must also have procedures for continuous monitoring of pharmacovigilance data and scientific evaluation of all information on product risks.

The same 2018 situational analysis observed that PSURs submitted to NAFDAC often lacked Nigeria-specific data, and that Nigerian risk management plans were difficult to adapt to the local situation because that situation was unknown. Both are downstream consequences of cases being processed but never analysed.

The fix

  • Write a signal detection procedure that states the method, the data sources, the frequency, the roles and the escalation route
  • Adopt a designated medical event list so that clinically significant events trigger review on a single occurrence
  • Run cumulative review by product on a fixed cycle, reading the case series rather than counting it
  • Review safety actions taken by other regulators on the same molecule, since signals arising outside Nigeria are in scope
  • Minute every review, including reviews that identified nothing
  • Feed conclusions into the risk management plan, product information and aggregate reports

Evidence to retain

The signal detection procedure, review minutes with attendees, method and data sources, validation decisions with reasoning, signal assessments and the actions that followed. Our article on signal detection in pharmacovigilance in Nigeria explains why standard statistical methods underperform on small Nigerian datasets and what to use instead, and the glossary entry on the Risk Management Plan sets out where conclusions should land.

Mistake 5 of 5

Running a system you cannot prove

What it looks like

The company does most things reasonably well, but the evidence is scattered or missing. The Pharmacovigilance System Master File was written for the registration application three years ago and has not been touched since. Nobody can say what percentage of serious cases went in on time last year. An audit was scheduled and postponed twice. A finding from the last partner audit is still open, and nobody is sure who owns it. In an inspection, this company looks almost identical to one that does nothing at all.

What NAFDAC actually requires

  • The master file must contain evidence of ongoing monitoring of system performance, including an explanation of how correct ICSR reporting is assessed and figures showing the timeliness of 15-day and 90-day reporting over the past year
  • A list of performance indicators must be provided in the master file annex alongside actual measured results
  • Changes to the master file must be recorded in a logbook showing the date, the person responsible and the nature of each change
  • The master file must hold a list of completed audits covering five years and the audit schedule
  • Where an audit raises a significant finding, a note stays in the master file until corrective action is demonstrably complete or independently verified
  • A record management system must ensure retrievability and traceability of the measures taken to investigate safety concerns, their timelines and the decisions reached
  • The QPPV must be informed of scheduled audits, must be able to trigger an audit, and must receive the corrective and preventive action plan after each audit

The fix

  • Instrument the case workflow so that receipt date, submission date and elapsed days are captured automatically
  • Report reporting timeliness monthly and review it at management level
  • Assign a master file owner, set up the change-control logbook and review the file on a defined cycle
  • Publish an audit schedule, complete audits on time, and track every corrective action to verified closure
  • Set record retention periods and confirm records can be retrieved within minutes, not days
  • Run a mock inspection before NAFDAC runs a real one

Evidence to retain

The current master file with logbook, timeliness figures and graphs, performance indicators with results, the audit schedule and five-year audit list, CAPA records with effectiveness checks, and mock inspection reports. Our PV Readiness Guide covers inspection preparation in depth.

Which mistakes is your company making?

Answer each question with an immediate, evidenced yes or no. A yes that cannot be backed by a document on request should be counted as a no.

Self-diagnostic questions

  • Can you name the written procedure that governs each of NAFDAC's critical pharmacovigilance processes?
  • Does your QPPV reside and operate in Nigeria, with a documented deputy?
  • Can your QPPV access the safety database at 10pm on a Saturday?
  • Was your QPPV consulted before your last acquisition, partnership or vendor contract?
  • Have your sales, quality, medical information and customer service staff been trained to forward safety information, with records?
  • Do you reconcile your safety database against quality complaints and medical information enquiries?
  • Does every distributor and partner have a signed pharmacovigilance agreement?
  • Do you have a written signal detection procedure, and minutes from the last review?
  • Can you produce last year's 15-day and 90-day reporting timeliness figures today?
  • Does your master file logbook show a change within the last six months?
  • Are all corrective actions from your last audit closed and verified?
  • Have you run a mock inspection in the last twelve months?

Three or more "no" answers suggest a material compliance gap. Take the PV readiness assessment for a structured self-assessment, or speak with the MedNova team about a full system review.

Take the PV Readiness Assessment

Pharmacovigilance audit readiness: a 30-day plan

For a company that recognises several of these mistakes and expects scrutiny, the following sequence addresses the highest-risk gaps first.

Week 1: establish accountability

  • Confirm the QPPV's residency, authority, deputy and NAFDAC notification
  • Test out-of-hours database access and document the result
  • Assign owners to each critical pharmacovigilance process

Week 2: close the intake gaps

  • Map every intake channel
  • Brief sales, quality, medical information and customer service staff, and record attendance
  • Run a first reconciliation between the safety database and complaint and enquiry records, and process any missed cases
  • List every partner without a pharmacovigilance agreement and start execution

Week 3: prove performance

  • Pull reporting timeliness for the past year and graph it
  • Define performance indicators and record current results
  • Update the master file and open the change-control logbook
  • Run a first documented cumulative review for each product

Week 4: test and correct

  • Run a mock inspection covering the QPPV, the master file, a sample of cases and the signal detection record
  • Raise corrective actions for every gap found, with owners and dates
  • Schedule the formal audit programme for the year ahead
What 30 days will and won't doThirty days will not produce a mature system. It will produce an honest one with documented plans to close what remains, which is a very different position to be in when an inspector arrives.

Why these mistakes matter more now

Three developments have raised the cost of each of these mistakes. NAFDAC has sustained WHO Maturity Level 3 status through re-benchmarking and has become a full Regulatory Member of the International Council for Harmonisation, bringing a defined implementation pathway for core ICH pharmacovigilance guidelines. Our ICH and NAFDAC comparison sets out what that means in practice.

Continental safety surveillance has also moved under a single institution, with the transfer of the AU Smart Safety Surveillance programme to the African Medicines Agency in January 2026, a programme in which Nigeria was a founding country. Our article on what the African Medicines Agency means for NAFDAC-registered companies covers the implications.

Nigeria's reporting base has changed as well. A published analysis of reporting before and after the Med Safety App recorded adverse event reports in the national system rising from 2,051 in the baseline period to 18,995 after deployment, with direct consumer reporting rising from 2.7% to 17.6%. More reports reaching the regulator directly means more opportunities for NAFDAC to see a case that the Certificate of Registration Holder never captured, which is precisely the exposure Mistake 3 creates. Our walkthrough of what happens after you report an adverse event to NAFDAC traces how those reports travel.

Frequently asked questions

What are the most common pharmacovigilance compliance mistakes in Nigeria?

Treating pharmacovigilance as an adverse event inbox rather than a quality system, appointing a QPPV without the authority, cover or access the role requires, letting safety information leak through sales, quality, medical information or distributors, processing cases without ever reviewing them together for signals, and running activities that are not recorded, measured or audited.

Is submitting adverse event reports enough for NAFDAC compliance?

No. NAFDAC defines a pharmacovigilance system as a quality system covering organisational structure, responsibilities, procedures, processes, resources, compliance management and record management. Case reporting is one of several critical processes that NAFDAC's guidelines require.

Does the QPPV have to live in Nigeria?

Yes. NAFDAC's guidelines state that the QPPV should reside and operate in Nigeria, and must be permanently and continuously at the Certificate of Registration Holder's disposal, with documented back-up arrangements.

What does a QPPV need beyond qualifications?

Authority to influence the quality system, access to and authority over the master file, a documented deputy, access to the safety database at any time including out of hours, a job description, a place on the organisational chart, and early involvement in acquisitions, partnerships and vendor contracts.

Do sales and marketing staff need pharmacovigilance training?

Yes. NAFDAC's guidelines require adequate training for staff whose work may affect the pharmacovigilance system even without a formal pharmacovigilance role, expressly including sales and marketing, product complaints, medical information, regulatory affairs, clinical trials, legal affairs and audit.

Is signal detection mandatory in Nigeria?

Yes. Signal detection and management is named as a critical process in NAFDAC's guidelines, and the master file must describe the process for signal generation, detection and evaluation and the decisions that follow.

What reporting performance evidence does NAFDAC expect?

The master file must explain how correct ICSR reporting is assessed and present figures showing the timeliness of 15-day and 90-day reporting over the past year, together with a list of performance indicators and their measured results.

What happens to open audit findings?

Where an audit raises a significant finding, NAFDAC's guidelines require a note to remain in the master file until the corrective action has been demonstrably completed or independently verified.

If we outsource pharmacovigilance, who is responsible for these mistakes?

The Certificate of Registration Holder. Outsourcing requires written agreements, a description of delegated activities in the master file and a list of subcontracts, but ultimate responsibility for the quality and integrity of the system never transfers to the vendor.

How can we prepare for a NAFDAC pharmacovigilance inspection?

Confirm the QPPV arrangements, close intake gaps across all departments and partners, produce measured reporting timeliness figures, update the master file and its logbook, document signal detection reviews, close open corrective actions, and run a mock inspection before the real one.

Key takeaways

  • Most pharmacovigilance failures come from doing the visible work well and missing the system behind it.
  • A QPPV is only as effective as the authority, cover and access the company provides.
  • The most dangerous cases are the ones that never reach the pharmacovigilance team.
  • Processing cases is not the same as monitoring a product. Signal detection is required, and so is the record of it.
  • If an activity cannot be evidenced, it will be treated as not having happened.

How MedNova helps close these gaps

MedNova Lifesciences provides pharmacovigilance services in Nigeria covering pharmacovigilance system setup and SOP development, gap assessment against NAFDAC requirements, ICSR intake and case processing, aggregate reporting, signal detection and risk management, weekly literature surveillance, inspection readiness and CAPA management, and local QPPV representation for Marketing Authorisation Holders. We also provide regulatory affairs support in Nigeria covering NAFDAC product registration and lifecycle management, clinical development services, and training and consulting for pharmacovigilance and non-pharmacovigilance staff.

Related reading: NAFDAC pharmacovigilance requirements, what GVP compliance means in Nigeria, signal detection in pharmacovigilance, ICH guidelines compared with NAFDAC requirements, what happens after you report an adverse event to NAFDAC, what the African Medicines Agency means for NAFDAC-registered companies and WHO prequalification compared with NAFDAC registration. For our full scope of work, see the MedNova capability statement or browse the resources library.

Next step: take the PV readiness assessment to see which of these five mistakes may apply to your system, or contact our team to arrange a full compliance review.

Not sure which of the five mistakes apply to you?

MedNova Lifesciences helps companies close these gaps with system setup, QPPV representation, intake reconciliation and audit readiness, in Nigeria and across Africa.

Contact MedNova Lifesciences

References

  1. National Agency for Food and Drug Administration and Control. NAFDAC Good Pharmacovigilance Practice Guidelines (Doc. Ref. PV/PMS-GDL-017-01). https://www.nafdac.gov.ng/wp-content/uploads/Files/Resources/Guidelines/PVG_GUIDELINES/NAFDAC-Guidelines-on-Good-Pharmacovigilance-2021.pdf
  2. National Agency for Food and Drug Administration and Control. Good Pharmacovigilance Practice Regulations, 2021.
  3. National Agency for Food and Drug Administration and Control. Pharmacovigilance and Post Market Surveillance Guidelines index. Use this page to confirm the current edition of any NAFDAC document referenced above.
  4. National Agency for Food and Drug Administration and Control. Handling Adverse Drug Reactions (ADRs) and ADR reporting channels.
  5. KNCV Tuberculosis Foundation, NAFDAC and partners. Pharmacovigilance in Nigeria: a situational analysis at the start of the PAVIA project, 2018.
  6. Trends in Adverse Event Reporting Before and After the Introduction of the Med Safety App in Nigeria. Pharmaceutical Medicine, 2024. PubMed record 38705932
  7. Council for International Organizations of Medical Sciences. Practical Aspects of Signal Detection in Pharmacovigilance: Report of CIOMS Working Group VIII, 2010.
  8. National Agency for Food and Drug Administration and Control. NAFDAC's WHO ML3 re-benchmarking success.
  9. National Agency for Food and Drug Administration and Control. NAFDAC announces a transition from observer status to full membership of the International Council for Harmonisation.
  10. African Medicines Agency. AMA and AUDA-NEPAD conclude the transition of continental medicines regulatory programmes, 23 January 2026.
  11. MedNova Lifesciences. Pharmacovigilance services, Nigeria and Africa. mednovalife.com/pv.html
  12. MedNova Lifesciences. Regulatory services, Nigeria and Africa. mednovalife.com/regulatory.html